rs29459630 SNP Detail

Summary

• ID
  rs29459630
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:84071182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGGAGT ACCGCCCAGG
  GCCCTTAGGG AGGAATCAGT GAGTCTGCCC GGTGCTTGCT GCCTACTTGC GGGTCTGATT
  CTTTGCGTCG GTTCCTGGGC TCCGAGAGGG AGAAGACCAC GTGGGAGGCG GGTGTTGAGG
  GTTGGGTCTG GTTGCACGGA AAGTCTCGGT CCTCTCTTGC GGAGAGAGGT GTGGGGCGCA
  K
  AGGCGCGGGC TGCTGTGGTA CTCACTGTGC CTTTGTATCG CGGGGAGAGC CCGGGCCAGG
  CGGGCTGTCC CTTTGCCAGT TCCTGCTCGC AGGATTTGAG GGTTTCTATG AGGGACGTAA
  GTAGTAAAAG CGTGCTCACT AGTTCTTAAC TCTCCCTTTG GCGTTCGCCT TGCTAATTTA
  GGGCAGCTAT TGGAGATAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38827231	mCV24263415	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss132477383	ENSMUSSNP6085317	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
ss323769374	CHEV_11_83993858	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29459630					SNP	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84071182 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	within coordinates
Cpgi3430	CpG island 3430	within coordinates
Rr453130	regulatory region 453130	within coordinates
Rr453131	regulatory region 453131	906 bp distal
Rr453132	regulatory region 453132	359 bp distal
Tssr103798	transcription start site region 103798	699 bp downstream
Tssr103799	transcription start site region 103799	669 bp downstream
Tssr103800	transcription start site region 103800	507 bp downstream
Tssr103801	transcription start site region 103801	493 bp downstream
Tssr103802	transcription start site region 103802	479 bp downstream
Tssr103803	transcription start site region 103803	within coordinates