rs29459928 SNP Detail

Summary

• ID
  rs29459928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74720428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCGGCTTCG TTGTGCCCAT AATATTCTAG TGCTTTTCAA
  TGCTAACTGT ACGAATGGAG ATTGTATGGC TTTCCACCAA AGAGAGTTCC AGATGTAGGA
  Y
  ATTTTTGTTG TCCTAATCAA GAAGATGTAA GTGCTCAGCC CCCTTCCTGA ACTGCAGTTT
  GATAGTTCTT CACTTTTGCG AGGACCCGAG GTGGTAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38827544	mCV23964383	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss132436458	ENSMUSSNP4563129	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss323749904	CHEV_11_74643104	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29459928					SNP	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74720428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	97 bp proximal
Gm74357	predicted gene, 74357	343 bp downstream
Mnt	max binding protein	1318 bp upstream
Rr402716	regulatory region 402716	844 bp downstream
Rr402717	regulatory region 402717	629 bp upstream
Rr450974	regulatory region 450974	1316 bp distal
Rr450975	regulatory region 450975	822 bp distal
Rr450976	regulatory region 450976	482 bp proximal
Rr450977	regulatory region 450977	1197 bp proximal
Rr450978	regulatory region 450978	1374 bp proximal
Rr450979	regulatory region 450979	1615 bp proximal
Tssr102911	transcription start site region 102911	1286 bp upstream
Tssr102912	transcription start site region 102912	1305 bp upstream
Tssr102913	transcription start site region 102913	1333 bp upstream
Tssr102914	transcription start site region 102914	1612 bp upstream
Tssr109144	transcription start site region 109144	289 bp downstream
Tssr109145	transcription start site region 109145	1057 bp downstream