rs29460626 SNP Detail

Summary

• ID
  rs29460626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:4217357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG GTGAGGGGGC CGGTGAAGCT
  R
  AAAGTGAAGG ACGGGCAGGC GCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38829561	mCV22900093	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss131631478	ENSMUSSNP2484803	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29460626					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4217357 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2511	CpG island 2511	227 bp distal
Lif	leukemia inhibitory factor	within coordinates
Rr385518	regulatory region 385518	within coordinates
Rr441798	regulatory region 441798	1608 bp distal
Rr441799	regulatory region 441799	252 bp distal
Rr441800	regulatory region 441800	within coordinates
Rr441801	regulatory region 441801	1209 bp proximal
Tssr100122	transcription start site region 100122	860 bp downstream
Tssr100123	transcription start site region 100123	813 bp downstream
Tssr100124	transcription start site region 100124	684 bp downstream