rs29460627 SNP Detail

Summary

• ID
  rs29460627
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:113508684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGATAAGG ACAGCCTGCT
  TTTTTGCTGG TGGTGTTGAT ATGGAACCAA AAGTACAGAA ACCAAAAAAA CCTGTACACT
  GCCCCCTGGG GGTCACCTTG TGTATGAGAG AAGGAACTAC TGAGAACCAG GGGTTCCTGT
  TTTTGAATGA GCTATTTTGC TAGACAATAC ACAAACTGCA GCAACAGGTG ACGAACTTTT
  W
  CAAGGTCTCA TGACACTCGA AGAGAGCCGA GCTCAGAATG GACACTTCCT GGCTCTTCAT
  CCTTCTCTGT TCCCGGAAGG GTTTTTAACT AGAGGGGGCA ATAGGCATTG TAACAACTGT
  GTCTCAGGGA GGAGGAGGCC TGAGCTCACT CAGGGCCCCT TCTTTCCCCC AGGGCCACTC
  CCCTCGTTCT GAGAGCTGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38829563	mCV22621272	ABI	CRAMUS_MOUSE	f	SNP	T		A	A
ss132840858	ENSMUSSNP3051483	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29460627					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113508684 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4077	CpG island 4077			741 bp proximal
Rr403100	regulatory region 403100			within coordinates
Rr459386	regulatory region 459386			within coordinates
Rr459387	regulatory region 459387			544 bp proximal
Rr459388	regulatory region 459388			994 bp proximal
Rr459389	regulatory region 459389			1629 bp proximal
Slc39a11	solute carrier family 39 (metal ion transporter), member 11			Intron
				Noncoding-Transcript-Variant
Sstr2	somatostatin receptor 2			1484 bp upstream
Tssr105751	transcription start site region 105751			1460 bp upstream
Tssr105752	transcription start site region 105752			1522 bp upstream