rs29460678 SNP Detail

Summary

• ID
  rs29460678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104498861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGGTCTCC TCTAGTGAAC
  GCGGGCAGGT CCTCGTGGGC GGGGGGCTGG GGAAGATTGC AAAGTTTACC CATCACACTC
  AGCCTCAGGC AGGGTCCAGG CGTGAGCCGG AGGGAGGGAG CGCGAGCACT CCGCCCGCCC
  CGCTGTGTCC CACCCACCCC GTCCCCTCCC TTCTTCCCTC CCCTCCGCAG GAAAAGCAGC
  Y
  GCGGGTGCCA GGCTCGCCGT GGCGCGCGCG CGGCGTGAAG GGCGGCGGAC AGGATGCGAG
  CGCAGTGGCC GGGACAACTC TGGGCCGCTC TGCTGGCGCT GGGGGCGCTG GCGGGCGTTG
  TTGTTGGAGG TGAGCGAGTC GGGTGCGCGA AATGCCGTAG GACCCTGGGA ACCCGGAGCT
  AGGACTGAGA AGCAGAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38829964	mCV24560034	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss132755768	ENSMUSSNP6448415	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29460678					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104498861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3994	CpG island 3994	within coordinates
Itgb3	integrin beta 3	within coordinates
Rr403025	regulatory region 403025	within coordinates
Rr457855	regulatory region 457855	25 bp distal
Rr457856	regulatory region 457856	1359 bp proximal
Rr457857	regulatory region 457857	1815 bp proximal
Tssr105409	transcription start site region 105409	223 bp downstream
Tssr105410	transcription start site region 105410	23 bp downstream
Tssr105411	transcription start site region 105411	within coordinates
Tssr105412	transcription start site region 105412	5 bp upstream