rs29460698 SNP Detail

Summary

• ID
  rs29460698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:7162809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTT TGAACTTTAG GTTTCACAGT
  Y
  TCAAAGACAC CAGTGCTCTT AATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38830263	mCV25196189	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29460698					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:7162809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2571	CpG island 2571	235 bp proximal
Igfbp3	insulin-like growth factor binding protein 3	Intron
Rr442458	regulatory region 442458	1138 bp distal
Rr442460	regulatory region 442460	within coordinates
Rr442461	regulatory region 442461	1078 bp proximal
Tssr106776	transcription start site region 106776	605 bp downstream
Tssr106777	transcription start site region 106777	631 bp downstream
Tssr106778	transcription start site region 106778	726 bp downstream
Tssr106779	transcription start site region 106779	1007 bp downstream
Tssr106780	transcription start site region 106780	1041 bp downstream
Tssr106781	transcription start site region 106781	1106 bp downstream
Tssr106782	transcription start site region 106782	1134 bp downstream
Tssr106783	transcription start site region 106783	1360 bp downstream