rs29460966 SNP Detail

Summary

• ID
  rs29460966
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69491816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCT TGCTAGGCAA GTCCTCTGTC
  R
  CTGAGTGACA ACTCCGGTTC CCGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38832763	mCV23357639	ABI	CRAMUS_MOUSE	f	SNP		A	G
ss132359136	ENSMUSSNP4864856	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29460966					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69491816 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	1251 bp distal
Rr450034	regulatory region 450034	1380 bp distal
Rr450035	regulatory region 450035	328 bp distal
Tssr3544	transcription start site region 3544	286 bp upstream
Tssr102487	transcription start site region 102487	950 bp downstream
Tssr102488	transcription start site region 102488	173 bp upstream
Tssr102489	transcription start site region 102489	248 bp upstream
Tssr108712	transcription start site region 108712	972 bp upstream
Tssr108713	transcription start site region 108713	821 bp upstream
Tssr108714	transcription start site region 108714	753 bp upstream
Tssr108715	transcription start site region 108715	719 bp upstream
Tssr108716	transcription start site region 108716	415 bp upstream
Tssr108717	transcription start site region 108717	401 bp upstream
Tssr108718	transcription start site region 108718	337 bp upstream
Tssr108719	transcription start site region 108719	335 bp upstream
Tssr108720	transcription start site region 108720	319 bp upstream
Tssr108721	transcription start site region 108721	310 bp upstream
Tssr108722	transcription start site region 108722	232 bp upstream
Tssr108723	transcription start site region 108723	195 bp upstream
Tssr108724	transcription start site region 108724	149 bp upstream
Tssr108725	transcription start site region 108725	127 bp upstream
Tssr108726	transcription start site region 108726	25 bp upstream
Tssr108727	transcription start site region 108727	4 bp upstream
Tssr108728	transcription start site region 108728	29 bp downstream
Tssr108729	transcription start site region 108729	116 bp downstream
Tssr108730	transcription start site region 108730	148 bp downstream
Tssr108731	transcription start site region 108731	179 bp downstream
Tssr108732	transcription start site region 108732	240 bp downstream
Tssr108733	transcription start site region 108733	1462 bp downstream
Tssr108734	transcription start site region 108734	1753 bp downstream
Tssr108735	transcription start site region 108735	1820 bp downstream
Tssr108736	transcription start site region 108736	1858 bp downstream