rs29461048 SNP Detail

Summary

• ID
  rs29461048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:93776779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC AACATATTGG AAGGGACTCG
  R
  GGAGGCCGGA GTCCAAATGG AAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38829376	mCV22887092	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss132628032	ENSMUSSNP6971488	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29461048					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:93776779 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3539	CpG island 3539	within coordinates
Gm72169	predicted gene, 72169	1319 bp downstream
Mbtd1	mbt domain containing 1	within coordinates
Rr247507	regulatory region 247507	within coordinates
Rr366736	regulatory region 366736	within coordinates
Tssr3641	transcription start site region 3641	76 bp downstream
Tssr104149	transcription start site region 104149	812 bp downstream
Tssr104150	transcription start site region 104150	664 bp downstream
Tssr104151	transcription start site region 104151	29 bp downstream
Tssr104152	transcription start site region 104152	184 bp upstream
Tssr104153	transcription start site region 104153	204 bp upstream
Tssr104154	transcription start site region 104154	276 bp upstream
Tssr104155	transcription start site region 104155	292 bp upstream
Tssr110106	transcription start site region 110106	1688 bp upstream
Tssr110107	transcription start site region 110107	234 bp upstream
Tssr110108	transcription start site region 110108	212 bp upstream
Tssr110109	transcription start site region 110109	180 bp upstream
Tssr110110	transcription start site region 110110	138 bp downstream
Tssr110111	transcription start site region 110111	549 bp downstream
Utp18	UTP18 small subunit processome component	187 bp upstream