rs29461099 SNP Detail

Summary

• ID
  rs29461099
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62440718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGATATA AAATACTTTT
  TAAAAAAATC TGTTTACATC ATGCTGGGCA CGATGGTCCG TGTCTTTAAT TCCAACACTC
  GGAAGACAGA ACCAAGAGAA TCTCTTGTGA GCTCTTGATT TACATAGTCA TCCCAGGCCA
  ACCAGGGCTA CAGAGTGATG GCCAGTCTCC AAGGGGTGGG GCTAGGGGTG AACACAGCAC
  W
  AGCAACAAAA ACTATGCTAC GGAAAAAAAA ATCTATCTTG TCCAGATGCC ATTCTTTTGA
  AATATTATTA CTGGGTTGAA GTCACCAAAC GATCTACTTT GAAAACAAAA CAAACTAGGA
  AGCAATAACC CGTCTGGCAA TTGCTGGAAC TTACCCCAAT GAAGTCATCG CATCAATCAT
  AAGATCAGCA CTCTGGCTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38833664	mCV23970079	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss132285016	ENSMUSSNP435196	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29461099					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62440718 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3024	CpG island 3024	802 bp proximal
Gm12279	predicted gene 12279	within coordinates
Gm71785	predicted gene, 71785	574 bp upstream
Rr235278	regulatory region 235278	1318 bp distal
Rr246927	regulatory region 246927	within coordinates
Rr250876	regulatory region 250876	1518 bp distal
Rr386162	regulatory region 386162	within coordinates
Tssr102022	transcription start site region 102022	631 bp upstream
Tssr102023	transcription start site region 102023	678 bp upstream
Tssr102024	transcription start site region 102024	917 bp upstream
Tssr102025	transcription start site region 102025	1275 bp upstream
Tssr102026	transcription start site region 102026	1342 bp upstream
Tssr102027	transcription start site region 102027	1370 bp upstream
Tssr102028	transcription start site region 102028	1556 bp upstream
Tssr102029	transcription start site region 102029	1569 bp upstream
Tssr102030	transcription start site region 102030	1601 bp upstream
Tssr102031	transcription start site region 102031	1829 bp upstream
Tssr102032	transcription start site region 102032	1846 bp upstream
Tssr102033	transcription start site region 102033	1864 bp upstream
Tssr102034	transcription start site region 102034	1882 bp upstream
Tssr102035	transcription start site region 102035	1956 bp upstream
Tssr108430	transcription start site region 108430	1048 bp downstream
Tssr108431	transcription start site region 108431	1101 bp downstream
Ubb	ubiquitin B	1611 bp upstream