rs29461222 SNP Detail

Summary

• ID
  rs29461222
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29477463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACTGGCTT TGAACTTGGC ATCCTCCAGC CTTTGCCTAG
  AGTTGCCTGT GCCAGCAGGC CTGGCTTGAA TTTCTAAATC TTAGTTCATT TACTTGGAAT
  S
  AAGTCAGAAT TTCTTTTGAT CCTTTCCTTC TTGAATGAGT CTTTTAAGGT AAAATACTAA
  CTATTAAACA CCCACAAAGC CTCAGAATTA TCTATAAAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38831578	mCV25279095	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	C
ss131895997	ENSMUSSNP254236	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
ss323610912	CHEV_11_29427463	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29461222					SNP	G	C	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29477463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	737 bp distal
Gm57396	predicted gene, 57396	1079 bp upstream
Mtif2	mitochondrial translational initiation factor 2	within coordinates
Rr369145	regulatory region 369145	1060 bp downstream
Rr444173	regulatory region 444173	1090 bp distal
Rr444174	regulatory region 444174	996 bp distal
Rr444175	regulatory region 444175	318 bp distal
Rr444176	regulatory region 444176	1479 bp proximal
Tssr100719	transcription start site region 100719	1043 bp downstream
Tssr100720	transcription start site region 100720	989 bp downstream
Tssr107213	transcription start site region 107213	1084 bp upstream