rs29461633 SNP Detail

Summary

• ID
  rs29461633
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69910203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCATATAT GTGGGAAGGT GGGCTATGTG AGTGTGCTGG
  GGGGGAGGGT TGTCTTCCTT TCTGGGCAAA AAAGCTCATT TTGAGATACT GACCAATTTT
  K
  GGGGGGTCTC TTGGCATGAG GGTAAAGGTT ACTGGTTGTG AGTGTCTGGC TTGTATGGCG
  GTGTCAACTA GCAGGTAAGG GTGGGCCTTC AGGTGGTAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38833984	mCV22952518	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	G
ss132364011	ENSMUSSNP3299628	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		G
ss323732614	CHEV_11_69832879	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29461633					SNP	T	T	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69910203 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	1878 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	1418 bp upstream
Rr402686	regulatory region 402686	1784 bp upstream
Tssr102630	transcription start site region 102630	1285 bp downstream
Tssr102631	transcription start site region 102631	978 bp downstream
Tssr102632	transcription start site region 102632	893 bp downstream
Tssr102633	transcription start site region 102633	530 bp downstream