rs29461644 SNP Detail

Summary

• ID
  rs29461644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99886358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGAAGA GAAGGAAGGA
  GGGAGGGCAG ACCACTGGAA GCCAAAACAC TCCATTGAAA CAGGAATGTT GCAGGGCTGA
  AGAGAGGGCT CAGCACTTAA GAACACTTGT TTTTGTTGCA CCTCGGCAAC CCAGCTCTAG
  TTCCCTGCAC CCTCATGGCA GCTTACAACC ATCTGCAACT CCAGCCCCAG AGGAGCCAAC
  R
  TCCTCTTCTG GCCTCTGTGG TACCAGGTAC ATGAGCAGTG CACAGATATA CACACAGACC
  AAACACCCAT ATACATAAAG TAAATAAATC TATAAAAATA CAAATGGGAA TGTTGGATAC
  ATGGACATAT GCAACTGCCT TTGACAAAGC TACTGATTTT GTGTAGTTGC GTCAGGGCAA
  CCAACAGCAG TTAAAATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38832582	mCV22958751	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss132716461	ENSMUSSNP5259681	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss323830226	CHEV_11_99856846	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29461644					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99886358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1593 bp distal
Gm73159	predicted gene, 73159	191 bp downstream
Krtap17-1	keratin associated protein 17-1	1538 bp upstream
Tssr110721	transcription start site region 110721	1535 bp upstream