rs29461824 SNP Detail

Summary

• ID
  rs29461824
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117157431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTC AGACTTTGAA GGTGGGTGCC
  M
  GACCCAGCGG TTGCTTGGCG AGCTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38833279	mCV25128832	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss323868404	CHEV_11_117127919	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29461824					SNP	A	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117157431 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4205	CpG island 4205	within coordinates
Cpgi4206	CpG island 4206	543 bp proximal
Gm39478	predicted gene, 39478	562 bp upstream
Rr246205	regulatory region 246205	within coordinates
Rr369453	regulatory region 369453	749 bp downstream
Septin9	septin 9	within coordinates
Tssr106035	transcription start site region 106035	416 bp downstream
Tssr106036	transcription start site region 106036	339 bp downstream
Tssr106037	transcription start site region 106037	307 bp downstream
Tssr106038	transcription start site region 106038	133 bp downstream
Tssr112021	transcription start site region 112021	605 bp upstream
Tssr112022	transcription start site region 112022	551 bp upstream
Tssr112023	transcription start site region 112023	893 bp downstream