rs29462487 SNP Detail

Summary

• ID
  rs29462487
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5789645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCAAGCTATC TCTCCAGCCC CATTGGAAGA TTTTTGTGAT CTAAGGAGCA CAACCAACTG
  GAGGAAAAGA ATGGCAAGTG GAACCACATG TAACTTTAAA TCCTGGCCTG GCAGGGTGGC
  ATAGCTGCAC TGTCAGCACT CCAACCTGAG AAAGGAGGGA CTCCATTTGA AAGTAGTTTG
  AGCTGGCTGT GGGTTGTGAG TACTGAGTGT CCTATATGTG TCTGTGTGCC TAAGAGAGTC
  CCAGAGCAGG CTAAAGGGCA GGTCTGTAAT CCTCCTGTGC AAGGTGGAGA AAGGAAGGGA
  K
  CTCTCCTGGA GCGCTGAGAG ACCTGTTTGT GACTATCCTG GCACTGGAGG TAGCTTTTGC
  AGCAGAGCTA GCAGCAGGAT GCATAGTTAC CTGGTAGGTC CAGGACCTAG TATTGCTAAG
  ATGTGCTTGA ATGGAGTTGC CCTTCCTGGA GAGTGGTCTT CGGGTGGTAA CAAAGACTCC
  ACAGAACAAA GACTTCAGAT TCCCATATGG AAATTGTCTG GGTTTCAGTC CTACAGTGGT
  AGTCATGTGG TGGGGAAGTG AGTCTGAGAA GGGGCAGCCC AGATGTGTGC TGCTCTCTGT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38829513	mCV25062616	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29462487					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5789645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2542	CpG island 2542	1581 bp distal
Polm	polymerase (DNA directed), mu	1629 bp upstream
Rr369123	regulatory region 369123	1702 bp downstream
Rr385539	regulatory region 385539	within coordinates
Tssr106647	transcription start site region 106647	1909 bp upstream
Tssr106648	transcription start site region 106648	1887 bp upstream
Tssr106649	transcription start site region 106649	1810 bp upstream