rs29462618 SNP Detail

Summary

• ID
  rs29462618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70058467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTTTAATC ATTTATTTAT TTAATGTGTG TGAGAGTTTT
  GCCTGTGTGT ACATGTGTGC TCCTGTGTGC CTGTTGTCCA CAGAGGTAAG AAGCGGTTAT
  Y
  GGATCTCCTG GAAATAGAGT GAGCTATAAT GAATGGTTAT GAGCTGCCAG GTCGATCCTG
  GAAACTGAAC CCAGGTTCTC TGAAAGAACA ACAAATGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38834104	mCV23532898	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss323733893	CHEV_11_69981143	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29462618					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70058467 () rs orientation: forward

Symbol	Name	Function Class
Clec10a	C-type lectin domain family 10, member A	within coordinates
Rr251315	regulatory region 251315	605 bp distal
Tssr102659	transcription start site region 102659	978 bp downstream
Tssr102660	transcription start site region 102660	934 bp downstream
Tssr102661	transcription start site region 102661	857 bp downstream
Tssr102662	transcription start site region 102662	443 bp downstream
Tssr102663	transcription start site region 102663	419 bp downstream