rs29462757 SNP Detail

Summary

• ID
  rs29462757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96242040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC TTTCTACTCC CACTTCCCCC
  Y
  AAATGAGATT TTTTTTTCTT TTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38831005	mCV27576458	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29462757					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96242040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	798 bp proximal
Cpgi3657	CpG island 3657	1454 bp proximal
Hoxb2	homeobox B2	418 bp upstream
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr141	regulatory region 141	766 bp distal
Rr454	regulatory region 454	994 bp distal
Rr455383	regulatory region 455383	1139 bp distal
Rr455384	regulatory region 455384	746 bp distal
Rr455385	regulatory region 455385	within coordinates
Tssr104519	transcription start site region 104519	382 bp upstream
Tssr104520	transcription start site region 104520	655 bp upstream
Tssr104521	transcription start site region 104521	684 bp upstream
Tssr104522	transcription start site region 104522	736 bp upstream
Tssr104523	transcription start site region 104523	760 bp upstream
Tssr104524	transcription start site region 104524	840 bp upstream
Tssr104525	transcription start site region 104525	906 bp upstream
Tssr104526	transcription start site region 104526	1650 bp upstream
Tssr104527	transcription start site region 104527	1672 bp upstream
Tssr104528	transcription start site region 104528	1861 bp upstream
Tssr104529	transcription start site region 104529	1913 bp upstream
Tssr104530	transcription start site region 104530	1941 bp upstream
Tssr110331	transcription start site region 110331	1087 bp upstream
Tssr110332	transcription start site region 110332	1015 bp upstream