rs29462793 SNP Detail

Summary

• ID
  rs29462793
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116743988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG CGCCCGCGCC ACCCGGAAAT
  R
  AATCTCCTGA TTGGCCCATT CGGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss38829925	mCV22643628	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss323867028	CHEV_11_116714476	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs29462793					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116743988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4197	CpG island 4197	within coordinates
Mfsd11	major facilitator superfamily domain containing 11	within coordinates
Rr246191	regulatory region 246191	within coordinates
Rr403146	regulatory region 403146	within coordinates
Rr403147	regulatory region 403147	384 bp upstream
Srsf2	serine and arginine-rich splicing factor 2	68 bp upstream
Tssr106000	transcription start site region 106000	942 bp downstream
Tssr106001	transcription start site region 106001	588 bp downstream
Tssr106002	transcription start site region 106002	92 bp upstream
Tssr106003	transcription start site region 106003	295 bp upstream
Tssr106004	transcription start site region 106004	590 bp upstream
Tssr112001	transcription start site region 112001	1968 bp upstream
Tssr112002	transcription start site region 112002	1891 bp upstream
Tssr112003	transcription start site region 112003	1847 bp upstream
Tssr112004	transcription start site region 112004	1687 bp upstream
Tssr112005	transcription start site region 112005	1009 bp upstream
Tssr112006	transcription start site region 112006	970 bp upstream
Tssr112007	transcription start site region 112007	904 bp upstream
Tssr112008	transcription start site region 112008	798 bp upstream
Tssr112009	transcription start site region 112009	706 bp upstream
Tssr112010	transcription start site region 112010	63 bp upstream