rs29463002 SNP Detail

Summary

• ID
  rs29463002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96190432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCGT GCAACAGTGA GTGAGACTTC
  Y
  CGCTGTCCCG TGTCTGTGTG TGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss38833423	mCV27575684	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss132676686	ENSMUSSNP5369863	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29463002					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96190432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3641	CpG island 3641	within coordinates
Cpgi3642	CpG island 3642	941 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	within coordinates
Rr455361	regulatory region 455361	425 bp distal
Rr455362	regulatory region 455362	898 bp proximal
Tssr3658	transcription start site region 3658	341 bp downstream
Tssr104480	transcription start site region 104480	836 bp downstream
Tssr104481	transcription start site region 104481	808 bp downstream
Tssr104482	transcription start site region 104482	785 bp downstream
Tssr104483	transcription start site region 104483	523 bp downstream
Tssr104484	transcription start site region 104484	504 bp downstream
Tssr104485	transcription start site region 104485	477 bp downstream
Tssr104486	transcription start site region 104486	458 bp downstream
Tssr104487	transcription start site region 104487	384 bp downstream
Tssr104488	transcription start site region 104488	354 bp downstream