rs29463409 SNP Detail

Summary

• ID
  rs29463409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88862649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA TGGTGGCGCA CGCCTTTAAT
  Y
  CCAGCACTCT CGAGGCAGAG GCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38833433	mCV24309754	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss132548832	ENSMUSSNP4522149	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323783378	CHEV_11_88833137	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29463409					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88862649 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	834 bp upstream
Cpgi3523	CpG island 3523	1923 bp proximal
Gm10367	predicted gene 10367	553 bp downstream
Rr237596	regulatory region 237596	249 bp distal
Rr247482	regulatory region 247482	1551 bp proximal
Rr402857	regulatory region 402857	1475 bp downstream
Tssr104058	transcription start site region 104058	1560 bp downstream