rs29463522 SNP Detail

Summary

• ID
  rs29463522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69045983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGCTTTA AAAGAACAAA
  GATATTTATT TGATGTGTAT GTATGAGCAT GTATGTGAGA GTATGTGCCA TAGTTCATGA
  GTTCATGTAT GGGGGTCAGA GGTCAACTTT CATCATTCAG TTCTTTCCTT GGACCATGTG
  GGCCTGGAGA CTTAAACTCA GATCAGGTCA TTAGACTCAC AGGGAAGTAC ATTTATCCAC
  Y
  GAACCATCTC TGGCTCCCAT CTCCTTCCAT CCATTCTGGT GGCTTTGTTG TTGTTGTTGT
  TGTTGTTTCT GGTTTTTGGT TTTGGTTTTT GGTTTTCTGA CAGCATCTAC TATCTAGTCC
  TGACTGACCT GGAATTTGCT ATGTAGATCA GGCTGGCTTT GAACTCACAG AGATTCACCT
  ACTCACCTTC CTGTGCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38833050	mCV23167335	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss132349952	ENSMUSSNP4860073	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29463522					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69045983 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	1915 bp upstream
Cpgi3111	CpG island 3111	1782 bp proximal
Rr449891	regulatory region 449891	1585 bp proximal
Rr449892	regulatory region 449892	1843 bp proximal
Tssr102419	transcription start site region 102419	1731 bp upstream
Tssr102420	transcription start site region 102420	1756 bp upstream
Tssr102421	transcription start site region 102421	1875 bp upstream
Tssr102422	transcription start site region 102422	1896 bp upstream
Tssr102423	transcription start site region 102423	1906 bp upstream
Tssr102424	transcription start site region 102424	1927 bp upstream