rs29464158 SNP Detail

Summary

• ID
  rs29464158
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:85059276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGACCTGGC TGGGTTCAAA GACAGAGATC CTCCTGCCTC
  TGTCTCCCAA GTTCTGGGAC TAAAGGCATG TGCCACCACC ATCTGGCCAA AGGACAATTT
  K
  GAGGGTTGAT TCTTTGCTTG CACATGTGGG TCCTAGTGGT CAAACTCAGG CTGTCATCAC
  ACTTGGAGGC AAAGCCCTTA TCCACTGAAC CATCTCACT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38831855	mCV24662270	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	T
ss132490413	ENSMUSSNP965919	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29464158					SNP	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85059276 () rs orientation: forward

Symbol	Name	Function Class
Chct1	CHD1 helical C-terminal domain containing 1	Intron
Cpgi3451	CpG island 3451	1654 bp proximal
Gm73307	predicted gene, 73307	1165 bp downstream
Rr453329	regulatory region 453329	1495 bp proximal
Rr453330	regulatory region 453330	1768 bp proximal
Rr453331	regulatory region 453331	1965 bp proximal