rs29464215 SNP Detail

Summary

• ID
  rs29464215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTCCCTGGG GCCCTGGCTC AGCCTAGACA GCTCCCACAC CCTGAAGGCT GCTTCAGCCT
  CAGCATCTTC TATCCGCCCT CTCAGCGCCC TGCCTGCGGT TCCTCCCCAT CAGCTCCTAT
  AGGTCTCAAG CGCAGACGCC TGCTCACGGG CTACTGGCCC GGCTCCGCCT CATCTGCCAG
  GCTCACATCC CTCCCGCCCC GCCAAGGGCA GCAGCTGCTC CCGGCTCCAG AGGCATTCGC
  GGGACAGTGG TTCCCGCTGA CTGCTCCATC ACTGACTGCT CCATCACTCT TCGCTGTCTG
  R
  CTTCCCTTGT CTACCTCGTT TCTAACTGTG TGGCTTTAGC CATAGTGTCC GGGATTGAGC
  CCTCTCTTGG CTCCTGAAGA GCGGCCATGG CCACCTATAA AGTCAAGGTG GCCACGGGCA
  CTGACTTCTT TTCGGGGACG CTGGATTCAA TTTCACTGAC CATCGTGGGG ACCCAAGGAG
  AGAGCCATAA GCAGCGGTTG AACCACTTTG GGAGAGACTT TGCCACGGGG GCGGTAAGTG
  CGCACGCGTC ACCCAGGATG GATGGAGGCT TGGGGTGGAT GGAGGTATCC GGTAGGCAGC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38831254	mCV24154601	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29464215					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047986 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	within coordinates
Cpgi3111	CpG island 3111	within coordinates
Rr449891	regulatory region 449891	161 bp distal
Rr449892	regulatory region 449892	within coordinates
Rr449893	regulatory region 449893	949 bp proximal
Tssr102419	transcription start site region 102419	259 bp downstream
Tssr102420	transcription start site region 102420	244 bp downstream
Tssr102421	transcription start site region 102421	109 bp downstream
Tssr102422	transcription start site region 102422	99 bp downstream
Tssr102423	transcription start site region 102423	79 bp downstream
Tssr102424	transcription start site region 102424	50 bp downstream