rs29464517 SNP Detail

Summary

• ID
  rs29464517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88862808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCAACC TCAGCCTGGC
  ATGGTGGCGC ACGCCTTTAA TTCCAGCACT CTCGAGGCAG AGGCAGGAGG ATTTCTGAGT
  TCGAGGCCAG CCTGGTCTAC AAAGTGAGTT CCAGGACAGC CAGGGCTACA CAGAGAAACC
  CTGTCTTGAA AAAACAAAAC AAAACAACAA CAAACAACAA CAACAACAAC AAAGATTTAG
  R
  AAGGCAGCTT GAATTTGATG ATCACATTTT GATGCTATGT CATTTAGCAG CTTTTTAATG
  CTTGAGATGA GGTTGAAGAA CCAAGAAAGG TGTGAGTCTT TTCCTTAAAA TACACAAGGC
  CCCAAAGCAG CCTTCCCTGA TTTTTGCAAA GATTGACTTC AGTTGTAAAG AGAAGTCAGA
  AAAATATTAA TTGAATCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss38833556	mCV24310025	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss132548848	ENSMUSSNP1406653	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G		G
ss323783379	CHEV_11_88833296	CHEVERUD	SCREENING_POP	f	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29464517					SNP	G	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88862808 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	675 bp upstream
Coil	coilin	1953 bp upstream
Cpgi3523	CpG island 3523	1764 bp proximal
Gm10367	predicted gene 10367	394 bp downstream
Rr237596	regulatory region 237596	408 bp distal
Rr247482	regulatory region 247482	1392 bp proximal
Rr402857	regulatory region 402857	1634 bp downstream
Tssr104058	transcription start site region 104058	1719 bp downstream
Tssr104059	transcription start site region 104059	1937 bp upstream
Tssr104060	transcription start site region 104060	1946 bp upstream