rs29464589 SNP Detail

Summary

• ID
  rs29464589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105347101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAA TGTAGCTGTG CGGCAGTTGG
  R
  GGTGATGGAA CTACCAGTGT ACAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss38834767	mCV24767688	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss132763197	ENSMUSSNP3106828	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss323838319	CHEV_11_105317589	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29464589					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105347101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	173 bp proximal
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	within coordinates
Rr457973	regulatory region 457973	within coordinates
Rr457974	regulatory region 457974	450 bp proximal
Tssr3699	transcription start site region 3699	484 bp downstream
Tssr111262	transcription start site region 111262	987 bp upstream
Tssr111263	transcription start site region 111263	950 bp upstream
Tssr111264	transcription start site region 111264	399 bp downstream