rs29465069 SNP Detail

Summary

• ID
  rs29465069
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69046575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCCATATA TAATCTCTAG GGTGTTTATC TGTAAAATAC
  CTTAATTTGG AGACTGGTAT GGCTCAGCAG ATAAGAGAAC TGCTGCTCTT CGTGAAGATT
  K
  GGGTTCAATT CCCAGCACCC ACATGGTGGC TCACAGCCTT CTCTTACTCC AGTTCCAGGG
  AACCCAATGC TACCTTATGG CCTCTGCAGA CACCAGGCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss38835693	mCV23167345	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss132349968	ENSMUSSNP3072936	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
ss323727808	CHEV_11_68969251	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29465069					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69046575 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	1323 bp upstream
Cpgi3111	CpG island 3111	1190 bp proximal
Rr449891	regulatory region 449891	993 bp proximal
Rr449892	regulatory region 449892	1251 bp proximal
Tssr102419	transcription start site region 102419	1139 bp upstream
Tssr102420	transcription start site region 102420	1164 bp upstream
Tssr102421	transcription start site region 102421	1283 bp upstream
Tssr102422	transcription start site region 102422	1304 bp upstream
Tssr102423	transcription start site region 102423	1314 bp upstream
Tssr102424	transcription start site region 102424	1335 bp upstream