rs29465259 SNP Detail

Summary

• ID
  rs29465259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69913188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATTTTATG TTCTGTAGAC AGCTGATTTG GGGAGAACCC
  TCATGAGAGG GGTGAACATT CTCTGGGAGA GAGGTTTGCA AGTTCAGGAG TTAGGGAAAG
  R
  ATAGAAGACT GAAGTGATAT GGAGCAATTT AGGGTATTCT GAAAGATTTG TGGGTTACTG
  TAAATTGCAG TCCAGATCAT TGGTGAAATT ATTATTTTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38835501	mCV22952737	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss132364047	ENSMUSSNP4768875	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss323732625	CHEV_11_69835864	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29465259					SNP	G	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69913188 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dlg4	discs large MAGUK scaffold protein 4			Intron
				Noncoding-Transcript-Variant
Rr402685	regulatory region 402685			1267 bp downstream
Rr402686	regulatory region 402686			900 bp downstream
Rr450198	regulatory region 450198			1375 bp distal
Rr450199	regulatory region 450199			940 bp distal
Rr450200	regulatory region 450200			318 bp distal
Rr450201	regulatory region 450201			1163 bp proximal
Tssr102634	transcription start site region 102634			1560 bp upstream