rs29465340 SNP Detail

Summary

• ID
  rs29465340
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87017930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCGCTCCGC CCCGCCCCTC CCCTCCCCTC CCGCAACGCC
  GAGTGCGCGT GCGCATCGCG TCCGCCCCGT TGCCGCGCCT CTAGCTGCCC TGGTTACCGT
  W
  GGTGTTTGCG AATTCTCTGT GGCGCCTGTT CCGCCCCGGA CGGGCCCCGC GGCGGTTTTC
  ACACGCGCGC GCCGGCGTCA CGTGGGCCAG GGCTCCCAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss38834413	mCV25200027	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29465340					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87017930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3484	CpG island 3484	within coordinates
Gm11491	predicted gene 11491	76 bp upstream
Rr453749	regulatory region 453749	210 bp distal
Rr453750	regulatory region 453750	17 bp distal
Rr453751	regulatory region 453751	within coordinates
Trim37	tripartite motif-containing 37	within coordinates
Tssr103911	transcription start site region 103911	53 bp downstream
Tssr103912	transcription start site region 103912	within coordinates
Tssr103913	transcription start site region 103913	4 bp upstream
Tssr103914	transcription start site region 103914	60 bp upstream
Tssr103915	transcription start site region 103915	68 bp upstream
Tssr103916	transcription start site region 103916	163 bp upstream