rs29465536 SNP Detail

Summary

• ID
  rs29465536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5789457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTA ACTTTAAATC CTGGCCTGGC
  R
  GGGTGGCATA GCTGCACTGT CAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38836105	mCV25062614	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A	A
ss131639996	ENSMUSSNP1135420	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss323549178	CHEV_11_5739460	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29465536					SNP	A	G	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5789457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2542	CpG island 2542	1393 bp distal
Polm	polymerase (DNA directed), mu	1441 bp upstream
Rr369123	regulatory region 369123	1514 bp downstream
Rr385539	regulatory region 385539	31 bp upstream
Tssr106647	transcription start site region 106647	1721 bp upstream
Tssr106648	transcription start site region 106648	1699 bp upstream
Tssr106649	transcription start site region 106649	1622 bp upstream