rs29465724 SNP Detail

Summary

• ID
  rs29465724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70211377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGGGAACA CCCTAAAAGA AAGAATTATA TAGGTCACAA
  CCATGGCATA GCTCCAAAGT TGAGAAACTC CAAGTGATGA TGAAACCTGT CACCATTTTG
  Y
  ATGCTAACCT TAAAAAATGA TCTAAGAAAA GAAATCCTAA ATGCAGATAA AGGAGGGTAT
  TGATGATGGA GTCACACAAG GAGAGGTGGG GGGGAAGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38837070	mCV23935234	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss132369432	ENSMUSSNP1216818	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss323735016	CHEV_11_70134053	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29465724					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70211377 () rs orientation: forward

Symbol	Name	Function Class
Alox12e	arachidonate lipoxygenase, epidermal	within coordinates
Cpgi3180	CpG island 3180	1106 bp proximal
Rr450275	regulatory region 450275	1280 bp proximal
Tssr108941	transcription start site region 108941	1913 bp downstream
Tssr108942	transcription start site region 108942	1951 bp downstream
Tssr108943	transcription start site region 108943	1969 bp downstream