rs29465907 SNP Detail

Summary

• ID
  rs29465907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29475030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCCACAA AATTTCATGT
  AGGATCCATG AGGTTAAAGG TCAATATGAA CTGTTATGTC TAAAATATCT TGAGTCTGAG
  TTGCCCAGTA GTCAGCATTT CCTGCACCTG TGTATGAACT CGTTGTGGTT TTTTTCCTTT
  ATAAGTTAAT AGGAAAGGAT ATCCATTGTC ATAGTTGAGA TAATTCTGAG CTGTCTCTGG
  Y
  CTGACCAGTA TTAGGATGTG CATTCAATAA ACTATTCCTG CTTATTATTC CTATGGTTTG
  TGTGGCGATT CCTGAACCCA AACAGTTTTC TACAATGATT TCTTCAAGGT CCAAGTACTT
  CTAGAAAACA ACTATTCCTT CTGATGTTTG CCCAGAGATA CAGTGATTCT ATTAGAACTA
  CACTACAGGC TACAGAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38837962	mCV25279127	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss131895973	ENSMUSSNP4533750	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss323610902	CHEV_11_29425030	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29465907					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29475030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	1024 bp proximal
Gm57396	predicted gene, 57396	949 bp downstream
Mtif2	mitochondrial translational initiation factor 2	1378 bp upstream
Rr369145	regulatory region 369145	1264 bp upstream
Rr444173	regulatory region 444173	793 bp proximal
Rr444174	regulatory region 444174	1344 bp proximal
Rr444175	regulatory region 444175	1438 bp proximal
Tssr100719	transcription start site region 100719	1377 bp upstream
Tssr100720	transcription start site region 100720	1393 bp upstream
Tssr107213	transcription start site region 107213	1313 bp downstream