rs29466299 SNP Detail

Summary

• ID
  rs29466299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46708935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTATGTTT TTGAAAAGTC
  AGCATTTTGG GTTCTCCACT TGACCTCTGA GGAGTCTTGC AGAATCTGTG TGTTGAAGGT
  TATTCTAGGA TAAACTCTAG TCAGGGTTGA ACCTATCCTC TCAGGAACAA AATCTCTTGA
  GTGTTTGAGA TTTGTTGAAG TGAGATGGCT AATTGGTGCC TTAAAATTTG TAAGAGGAGG
  R
  GTTTCATGAT ATCCACTTCT TTCCAACTCA TGGTTGCTGT GGAGAGAGAC GTTTCTTAGT
  AGTGTAGCCA CTGGGAAGCT GCCCACGCTG CTGTAAATAG CCCATCACCT ATGCTCCTGT
  ATGCAACTCT AATTGACTCA GTGGAGCACT CATGCACACA CATACATATA CACCTAAACA
  TACACAACAC ACACACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38837379	mCV25344048	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss132104558	ENSMUSSNP5194543	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss323660827	CHEV_11_46631610	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29466299					SNP	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46708935 () rs orientation: forward

Symbol	Name	Function Class
Timd4	T cell immunoglobulin and mucin domain containing 4	Intron
Tssr101132	transcription start site region 101132	544 bp downstream
Tssr101133	transcription start site region 101133	518 bp downstream