rs29466384 SNP Detail

Summary

• ID
  rs29466384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115077932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAGTGGA GCTATGTTGA
  CAGAAGAGCG TCCTGCCTTC CCCTCACAAC TACGTGAAAG AACGGGGATT CTAAAACTCT
  TGTAAGAGAA AGAGCCGAAG TGGTCAATAC ATCTGGGCTC TCACCCAGGG GCCAAGTTCT
  GGCTCGGTTT CCAGCCCATT CCTACACAAC ATGCCCGTCC ACCCCCAAAT GACCTGTTAA
  Y
  CCTTTTTTTA ACCTGTTTCC AACCCTAGCC TCCAGCGTCC AGAGTCCACG TCACTCGGCT
  CTGGCCCTTC CGTTTTCCTG TCCCCAAGCC CCACTCAAAG TTCTCAGGCC TCAGCCCTTT
  GCGTGGTTCC TCGGCCGTCT AAGCGCTGTA GTTTGCAAAC TGCAAAGCTC ACAACCACCC
  CCTGCCGAGG AAGGCGTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38835846	mCV22628612	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss132872456	ENSMUSSNP1488024	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323861636	CHEV_11_115048420	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29466384					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115077932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	within coordinates
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	within coordinates
Rr403112	regulatory region 403112	96 bp upstream
Rr459794	regulatory region 459794	216 bp proximal
Rr459795	regulatory region 459795	392 bp proximal
Rr459796	regulatory region 459796	728 bp proximal
Rr459797	regulatory region 459797	1483 bp proximal
Rr459798	regulatory region 459798	1613 bp proximal
Tmem104	transmembrane protein 104	381 bp upstream
Tssr3728	transcription start site region 3728	462 bp upstream
Tssr3729	transcription start site region 3729	1549 bp downstream
Tssr105849	transcription start site region 105849	375 bp upstream
Tssr111731	transcription start site region 111731	152 bp downstream
Tssr111732	transcription start site region 111732	184 bp downstream
Tssr111733	transcription start site region 111733	215 bp downstream
Tssr111734	transcription start site region 111734	721 bp downstream
Tssr111735	transcription start site region 111735	753 bp downstream
Tssr111736	transcription start site region 111736	1658 bp downstream