rs29466460 SNP Detail

Summary

• ID
  rs29466460
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:113511347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCCCAAGCGA CTGTCAGCGC TCCTAGCTGC CCCTGGCACC TCAGTCCCCT CTGCGTTTCG
  AAGCTGAACA TTGCAGGCAC CGCAATCCAC TCTCCCTTAG TCTGCCTAGA AACGGTAAAG
  ATCCCTTAGG GAACACGTTG TTTCCAGAGT CAGCGAGTTA TGACCCTAAA TATTTTCCTC
  ACACTAACTC CATCGTCCTG AGCCTCGCTT ATCCACCTTC GCCCCAATGG CGAGGGGCAC
  TCTAGCATCG TGGTGGGCTA CACAGGGCTG CTGCAAGTTC CAACCTCAGA TTCTTGGAGG
  K
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTAGGTGT CTGGTAGGCT
  TGGAGATGGG GAGGTCTTGA GGGCTCACAA CAGAAAGATG CTGGAAAGAA ACTAAACCCA
  CCTGTCCCTC CTCTAGTTGT GGAGCAGTCT GTGGGAGGGA AAGAGGGGGT TCCTGAGTGG
  AAACCCTTCT TTCCATCGGA GCCAGGGGAC GCCACCCACC AAGCTACAGG CCAGTATTTA
  GCAGCAAAGC AGAGAGCCTG ACTTTCCCAG GGCATTTAAT TTAAGCACAA TTCAACAAGT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38838282	mCV22621577	ABI	CRAMUS_MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29466460					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113511347 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4077	CpG island 4077			552 bp distal
Rr459388	regulatory region 459388			1035 bp distal
Rr459389	regulatory region 459389			within coordinates
Slc39a11	solute carrier family 39 (metal ion transporter), member 11			Intron
				Noncoding-Transcript-Variant
Sstr2	somatostatin receptor 2			Intron
Tssr105751	transcription start site region 105751			1175 bp downstream
Tssr105752	transcription start site region 105752			1136 bp downstream