rs29466532 SNP Detail

Summary

• ID
  rs29466532
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69803605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCAGTTC CTGGTTCCAT
  CTCCATGCTG AGTGTGGATT AGATGAGTGC ATCTGTAGGC CTGTTTTTCT GAATGTGTAT
  GGATACCAAG TCTTTCAAAA TATCCTGCAC CAGGCAATGG GTTTGACCCC TTGTACTACC
  TAAACTGTGC TTGCGCATTG TAACAAATTC CTGGAGTCCT AACACTAAGT GGCAGGGTCA
  R
  TGGGTCGGAA GTTTAAGGTT GTCCTTCCTT TATAGGGAGG TTGACTCCAG CCTGGTAGAG
  ACCCTATACT GTCTCCCAAA AGTGGGTGAA GTAGATGAGA AGTGCACTTG GAGTGTTTGG
  AAGACGTGAA CTAGAGTGCC AGGGTAAATA AACACATGAA GAGTGCTGGG GAGGAGTTAG
  CTGAGCAGGC CAGGGGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38835436	mCV23933153	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss132362910	ENSMUSSNP4108105	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29466532					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69803605 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3157	CpG island 3157	561 bp proximal
Gps2	G protein pathway suppressor 2	1109 bp upstream
Neurl4	neuralized E3 ubiquitin protein ligase 4	within coordinates
Rr247070	regulatory region 247070	195 bp proximal
Rr402680	regulatory region 402680	1008 bp upstream
Tssr102550	transcription start site region 102550	1431 bp downstream
Tssr102551	transcription start site region 102551	1419 bp downstream
Tssr102552	transcription start site region 102552	1229 bp upstream
Tssr102553	transcription start site region 102553	1373 bp upstream
Tssr102554	transcription start site region 102554	1400 bp upstream
Tssr102555	transcription start site region 102555	1457 bp upstream
Tssr102556	transcription start site region 102556	1507 bp upstream