rs29467393 SNP Detail

Summary

• ID
  rs29467393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68920032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGAAGGG ATCTGATGCC
  CTCTTCTGGA ATACAGGTGC ATACACAGAC AGAGCGACTC ATCCGTTAGA GAGTGGTGAC
  CTGAGCTTGT TCCCAGACTC TGCATGGTGA GAGAAGAGAG CTGACTCCCA CAAGTTGTCC
  TTTGACCTCC ACAAAAGTGA AATGATACCC CCCACCCCCA GTAAATGTAA TAAAACAAGC
  Y
  CCCAAAACTG TAGCTTGGAA TATAGAATTC TGTTGGGTTT TGCTTTGCTT TGTTTTCGTT
  ATTGCTTTTT TTTTTTTTAA CCTGAGGCAG TCTTGTTGTA TAGCCCATGC TGGCCTCGAA
  CTCCCGGAGG TCCTGCTACC TCAGCTTTCT GATTACTGGG ACTACAAGTA TGTATGTATG
  TACCACCGTG TTCAAGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38837934	mCV23351367	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss132347521	ENSMUSSNP5774883	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			C
ss323727075	CHEV_11_68842708	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29467393					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68920032 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr235731	regulatory region 235731	32 bp distal
Rr251243	regulatory region 251243	632 bp distal
Rr251244	regulatory region 251244	569 bp proximal
Rr251245	regulatory region 251245	1569 bp proximal
Rr253641	regulatory region 253641	within coordinates
Rr386226	regulatory region 386226	1080 bp downstream
Tssr102361	transcription start site region 102361	1870 bp downstream
Tssr102362	transcription start site region 102362	1847 bp downstream
Tssr102363	transcription start site region 102363	1224 bp downstream