rs29467419 SNP Detail

Summary

• ID
  rs29467419
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71639814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACATCTCCT CCCAAGAAGC AGCAGCTGCA GAGCAGTGCC
  CAGAATCGCG AGGAGTGCAT CTGGAGGTTC TCAGGGCTGT CCTCACTGCA ACCCTTGGGC
  W
  ACCATCTCCT TTTGTGCATC AAGAGCATTG TCTTTGAAGT GGATGCAAAT GAAGGTAGTT
  TGTCATAACT ATTAAGTGGG ACAAAGGATA TAAGAGGGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38835656	mCV23438289	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss132393484	ENSMUSSNP1847989	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		T
ss323743705	CHEV_11_71562490	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29467419					SNP	A	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71639814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3209	CpG island 3209	1430 bp proximal
Rr236016	regulatory region 236016	587 bp proximal
Rr241547	regulatory region 241547	14 bp distal
Rr247127	regulatory region 247127	786 bp proximal
Tssr102813	transcription start site region 102813	926 bp upstream
Tssr102814	transcription start site region 102814	1692 bp upstream
Tssr102815	transcription start site region 102815	1994 bp upstream
Wscd1	WSC domain containing 1	932 bp upstream