rs29467542 SNP Detail

Summary

• ID
  rs29467542
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104125805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAG CTTGGCTGGG TGGTTTGTTT
  K
  TTTTTTTTAA AGATGAATGA CAGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38838331	mCV24642347	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss132752585	ENSMUSSNP1281823	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29467542					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104125805 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3985	CpG island 3985	1748 bp distal
Cpgi3986	CpG island 3986	844 bp distal
Gm53648	predicted gene, 53648	within coordinates
Mapt	microtubule-associated protein tau	within coordinates
Rr457767	regulatory region 457767	within coordinates