rs29468021 SNP Detail

Summary

• ID
  rs29468021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68919800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGGGGGC ATCAGATCCC ATTACAGAGT GTTGTAAGCC
  ACAATGTGGT TGCTGGGAAT TGAACTCAGG ACTTCTGAAG AGCAGCCAAT GCTCTTAACC
  R
  GTTGAGCCCT CTCTCCAGCC CCTGCAACTC TCTATGAAGG GATCTGATGC CCTCTTCTGG
  AATACAGGTG CATACACAGA CAGAGCGACT CATCCGTTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38838047	mCV23351355	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss132347509	ENSMUSSNP2612805	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss323727072	CHEV_11_68842476	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29468021					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68919800 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr235731	regulatory region 235731	within coordinates
Rr251243	regulatory region 251243	400 bp distal
Rr251244	regulatory region 251244	801 bp proximal
Rr251245	regulatory region 251245	1801 bp proximal
Rr253641	regulatory region 253641	within coordinates
Rr386226	regulatory region 386226	848 bp downstream
Tssr102360	transcription start site region 102360	1851 bp downstream
Tssr102361	transcription start site region 102361	1638 bp downstream
Tssr102362	transcription start site region 102362	1615 bp downstream
Tssr102363	transcription start site region 102363	992 bp downstream