rs29468679 SNP Detail

Summary

• ID
  rs29468679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69870730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCA CAGCCCAGAA CGTGGACCTG
  Y
  TCCCCACTAA GGCAGAGATG AAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38839974	mCV23934522	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss132363613	ENSMUSSNP2087225	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss323732455	CHEV_11_69793406	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29468679					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69870730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3163	CpG island 3163	175 bp proximal
Ctdnep1	CTD nuclear envelope phosphatase 1	1264 bp upstream
Elp5	elongator acetyltransferase complex subunit 5	within coordinates
Gm56228	predicted gene, 56228	788 bp upstream
Rr369263	regulatory region 369263	within coordinates
Rr402684	regulatory region 402684	612 bp upstream
Rr450182	regulatory region 450182	368 bp proximal
Rr450183	regulatory region 450183	762 bp proximal
Rr450184	regulatory region 450184	1338 bp proximal
Tssr102587	transcription start site region 102587	847 bp upstream
Tssr102588	transcription start site region 102588	864 bp upstream
Tssr102589	transcription start site region 102589	876 bp upstream
Tssr102590	transcription start site region 102590	926 bp upstream
Tssr102591	transcription start site region 102591	1135 bp upstream
Tssr102592	transcription start site region 102592	1223 bp upstream
Tssr102593	transcription start site region 102593	1351 bp upstream
Tssr102594	transcription start site region 102594	1428 bp upstream
Tssr102595	transcription start site region 102595	1477 bp upstream
Tssr102596	transcription start site region 102596	1556 bp upstream
Tssr102597	transcription start site region 102597	1571 bp upstream
Tssr102598	transcription start site region 102598	1587 bp upstream
Tssr102599	transcription start site region 102599	1618 bp upstream
Tssr108900	transcription start site region 108900	314 bp downstream
Tssr108901	transcription start site region 108901	329 bp downstream
Tssr108902	transcription start site region 108902	370 bp downstream
Tssr108903	transcription start site region 108903	564 bp downstream
Tssr108904	transcription start site region 108904	1324 bp downstream
Tssr108905	transcription start site region 108905	1338 bp downstream
Tssr108906	transcription start site region 108906	1377 bp downstream