rs29468744 SNP Detail

Summary

• ID
  rs29468744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:75456286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGATCTAGAT GAGCCTTGCT CGCTGCTGTT TAGCCTCTCC AGGTACCTGC CTGCTTTAGT
  CTCCTGTAGC TATGACTACA AGTGTGAACC ACCCTACCTA GTAGAACATT TTTTGTTTTT
  GTTTTGTTTT GTTTTGTTTT GTTTTGTTTT TGAGATGTGG TAGACTAGGC TGGCATGGGA
  CTTACTTGGT AGACAGGGTT GGCTTCAGAC AGTAGGTGGT CCTCCTGTCT CAGCCCGGGA
  CTGGAACTAC GTCACACGCA GCTTAATCTT CTGGTATTTC ACTGAAATAA AAAAACTTTT
  Y
  GATGGGACCA ACTCAGCAGG AAGAGATGCT TGCTGCTAGC GTGGAAGTAG CACACAGTGG
  TCAGGAGTTG GTTCTCTTCT TCCCCTGTGC ATTCAATATC CAGCACTCAG GTGGCAGAGG
  CAGGTGAATC TCTGTGGGTT CAAGGCCAGC CTGGTCTACA GAGCGAATTT TATCTAGGGT
  AGCCATGGCT ACACAGAGAC ACCCTGTCTT AAAAAAGACA AAACGGGGGG AGGAGGGGGA
  TGGAAATCCT GATACACTCC CACAATCTCA GGGACTAGGC AGAGTGAGGC AGGAAGATTA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38840075	mCV22729093	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss132438533	ENSMUSSNP608198	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss323751028	CHEV_11_75378962	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29468744					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75456286 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D11Jcs7	DNA segment, Chr 11, John C. Schimenti 7			1566 bp distal
Rr451208	regulatory region 451208			774 bp distal
Slc43a2	solute carrier family 43, member 2			Intron
				Noncoding-Transcript-Variant
Tssr102977	transcription start site region 102977			1794 bp downstream
Tssr102978	transcription start site region 102978			1399 bp upstream