rs29468777 SNP Detail

Summary

• ID
  rs29468777
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94844487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA GTATAGAAGG GGCCTTCTAA
  W
  GCTGGGGTGT CACAAGGAGG ATGAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38840191	mCV22890655	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss132650940	ENSMUSSNP4040183	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29468777					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94844487 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	619 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	192 bp distal
Gm74287	predicted gene, 74287	590 bp downstream
Gm74290	predicted gene, 74290	1750 bp upstream
Tssr3647	transcription start site region 3647	1677 bp downstream
Tssr104288	transcription start site region 104288	1997 bp downstream
Tssr104289	transcription start site region 104289	1989 bp downstream
Tssr104290	transcription start site region 104290	1941 bp downstream
Tssr104291	transcription start site region 104291	1926 bp downstream
Tssr104292	transcription start site region 104292	1829 bp downstream
Tssr104293	transcription start site region 104293	1722 bp downstream
Tssr104294	transcription start site region 104294	1688 bp downstream
Tssr104295	transcription start site region 104295	1644 bp downstream
Tssr104296	transcription start site region 104296	1620 bp downstream
Tssr104297	transcription start site region 104297	1597 bp downstream
Tssr104298	transcription start site region 104298	1563 bp downstream
Tssr104299	transcription start site region 104299	1529 bp downstream
Tssr104300	transcription start site region 104300	1509 bp downstream
Tssr104301	transcription start site region 104301	1389 bp downstream
Tssr104302	transcription start site region 104302	1375 bp downstream
Tssr104303	transcription start site region 104303	1356 bp downstream
Tssr104304	transcription start site region 104304	1314 bp downstream
Tssr104305	transcription start site region 104305	1292 bp downstream
Tssr104306	transcription start site region 104306	1277 bp downstream
Tssr104307	transcription start site region 104307	1260 bp downstream
Tssr104308	transcription start site region 104308	1187 bp downstream
Tssr104309	transcription start site region 104309	1163 bp downstream
Tssr104310	transcription start site region 104310	1077 bp downstream
Tssr104311	transcription start site region 104311	1028 bp downstream
Tssr104312	transcription start site region 104312	959 bp downstream
Tssr104313	transcription start site region 104313	943 bp downstream
Tssr104314	transcription start site region 104314	538 bp downstream
Tssr104315	transcription start site region 104315	1748 bp upstream
Tssr110229	transcription start site region 110229	1991 bp upstream
Tssr110230	transcription start site region 110230	1954 bp upstream