rs29468809 SNP Detail

Summary

• ID
  rs29468809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69490567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATAACCCA GTATCACCCA AATCCACCCT CCAGTTGTTT
  CTCAGAGCTC TTCCAAATTC TCAGAAAAAG ACAAGCACAC ACAGGGCTCT GTGTATGATA
  Y
  ACATTTATAT ATATAATCGC TCTCAGTTTA TTGTACTTTA CCCTCTTTTT ACAGTAGATC
  TGACACAGGC ATTAAATAAC TGCAGAAGGA GACCACTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38839080	mCV23357627	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss132359124	ENSMUSSNP512010	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss323730633	CHEV_11_69413243	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29468809					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69490567 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	2 bp distal
Rr450034	regulatory region 450034	131 bp distal
Rr450035	regulatory region 450035	300 bp proximal
Tssr3544	transcription start site region 3544	954 bp downstream
Tssr102487	transcription start site region 102487	272 bp upstream
Tssr102488	transcription start site region 102488	1422 bp upstream
Tssr102489	transcription start site region 102489	1497 bp upstream
Tssr108712	transcription start site region 108712	266 bp downstream
Tssr108713	transcription start site region 108713	411 bp downstream
Tssr108714	transcription start site region 108714	493 bp downstream
Tssr108715	transcription start site region 108715	506 bp downstream
Tssr108716	transcription start site region 108716	818 bp downstream
Tssr108717	transcription start site region 108717	843 bp downstream
Tssr108718	transcription start site region 108718	902 bp downstream
Tssr108719	transcription start site region 108719	913 bp downstream
Tssr108720	transcription start site region 108720	917 bp downstream
Tssr108721	transcription start site region 108721	931 bp downstream
Tssr108722	transcription start site region 108722	1012 bp downstream
Tssr108723	transcription start site region 108723	1040 bp downstream
Tssr108724	transcription start site region 108724	1093 bp downstream
Tssr108725	transcription start site region 108725	1117 bp downstream
Tssr108726	transcription start site region 108726	1212 bp downstream
Tssr108727	transcription start site region 108727	1234 bp downstream
Tssr108728	transcription start site region 108728	1278 bp downstream
Tssr108729	transcription start site region 108729	1365 bp downstream
Tssr108730	transcription start site region 108730	1397 bp downstream
Tssr108731	transcription start site region 108731	1428 bp downstream
Tssr108732	transcription start site region 108732	1489 bp downstream