rs29468825 SNP Detail

Summary

• ID
  rs29468825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88900749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCG CCCTTTCTAT TAATTCGACT
  R
  GTTGAAGATC TTCATTGTTC CTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38839699	mCV22658232	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss132549879	ENSMUSSNP5364266	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
ss323783759	CHEV_11_88871237	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29468825					SNP	A	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88900749 () rs orientation: forward

Symbol	Name	Function Class
Trim25	tripartite motif-containing 25	within coordinates
Tssr104065	transcription start site region 104065	1794 bp downstream
Tssr104066	transcription start site region 104066	970 bp upstream
Tssr104067	transcription start site region 104067	1046 bp upstream