rs29469002 SNP Detail

Summary

• ID
  rs29469002
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116743118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG CGGCTTCGCG ACCTGGACCG
  R
  CTCCGGCTTC GAGATCGGCT GCGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38840621	mCV22643627	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss323867021	CHEV_11_116713606	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29469002					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116743118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4197	CpG island 4197	within coordinates
Mfsd11	major facilitator superfamily domain containing 11	148 bp upstream
Rr246191	regulatory region 246191	within coordinates
Rr403146	regulatory region 403146	702 bp upstream
Rr403147	regulatory region 403147	1254 bp upstream
Srsf2	serine and arginine-rich splicing factor 2	within coordinates
Tssr106000	transcription start site region 106000	72 bp downstream
Tssr106001	transcription start site region 106001	193 bp upstream
Tssr106002	transcription start site region 106002	962 bp upstream
Tssr106003	transcription start site region 106003	1165 bp upstream
Tssr106004	transcription start site region 106004	1460 bp upstream
Tssr111999	transcription start site region 111999	1644 bp upstream
Tssr112000	transcription start site region 112000	1361 bp upstream
Tssr112001	transcription start site region 112001	1098 bp upstream
Tssr112002	transcription start site region 112002	1021 bp upstream
Tssr112003	transcription start site region 112003	977 bp upstream
Tssr112004	transcription start site region 112004	817 bp upstream
Tssr112005	transcription start site region 112005	139 bp upstream
Tssr112006	transcription start site region 112006	100 bp upstream
Tssr112007	transcription start site region 112007	34 bp upstream
Tssr112008	transcription start site region 112008	31 bp downstream
Tssr112009	transcription start site region 112009	136 bp downstream
Tssr112010	transcription start site region 112010	791 bp downstream