rs29469048 SNP Detail

Summary

• ID
  rs29469048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:11506271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGTCACAGC GGCAGAGAAA CAGCTTCACC AGGTGATTGG ATTTGCTCTC TAAAATACAT
  CGCCACTTGT TGTCATGTGG GCCTCTGCAA ATTACATGCC TGGTTAGAGA CCTGGAGCTG
  AGCACTAAAG GGTCCTGCTG GCTTCCTCTC CCCCTCCTTC AAAATGCAAA AATTTTTTTT
  AATTTAATTT AATTTAATTT AATTCTTTTT ACTTATTCAC TTTACATCCT GCTCACTGCC
  CACCTCCCAG TCTCCCCTTC CACAATCCTT CCCCCATCTT CCCTTCCCCT TCTCCTCTGA
  R
  CAGGTGCCTC CCCCAGCTAT TCCCCCTACC CTGGCAAGTC AAGTCTCTTC AAAGCTAGAC
  ACTTCCTCTC CCATTGAGGC CAGACAAGGC AGCCTAGCTA GAACACATCT CACAGGCAGG
  CAACGGCTTT AGGATAGCCC TGCTCCAGTT GTTCAGGACC CACTTGAAGA CAAAGCTGTA
  CCTCTGCTAC ATATGTTCAG GGAGGCCTAG GTCCAGCCTG TGTATGCTCT TTGGATGGTG
  GTTCAGTCTC TGAGAGCCCC AAGGGTCCAA GTTAGTTGAT TTTACTGGTC TTCCTGTAGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J
ss38840229	mCV24438511	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J
rs29469048					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:11506271 () rs orientation: forward

Symbol	Name	Function Class
Gm11998	predicted gene 11998	1139 bp upstream
Gm29945	predicted gene, 29945	within coordinates
Rr402417	regulatory region 402417	913 bp upstream
Rr442717	regulatory region 442717	555 bp proximal
Rr442718	regulatory region 442718	1040 bp proximal
Rr442719	regulatory region 442719	1158 bp proximal
Rr442720	regulatory region 442720	1572 bp proximal
Rr442721	regulatory region 442721	1685 bp proximal
Tssr100349	transcription start site region 100349	1117 bp upstream
Tssr100350	transcription start site region 100350	1130 bp upstream
Tssr100351	transcription start site region 100351	1661 bp upstream
Tssr100352	transcription start site region 100352	1736 bp upstream