rs29469154 SNP Detail

Summary

• ID
  rs29469154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94968578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCC CATCCAATGG GATTCTGCTC
  Y
  GGTGTTTGAG GAACCAGCTC ATTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38840408	mCV24742208	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss132653102	ENSMUSSNP3198179	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29469154					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94968578 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	467 bp distal
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	951 bp upstream
Rr454945	regulatory region 454945	1314 bp distal
Rr454946	regulatory region 454946	1578 bp distal
Rr454947	regulatory region 454947	1312 bp distal
Rr454948	regulatory region 454948	1049 bp distal
Rr454949	regulatory region 454949	781 bp distal
Rr454950	regulatory region 454950	381 bp distal
Rr454951	regulatory region 454951	within coordinates
Rr454952	regulatory region 454952	388 bp proximal
Rr454953	regulatory region 454953	1410 bp proximal
Tssr3652	transcription start site region 3652	1136 bp upstream
Tssr104346	transcription start site region 104346	801 bp downstream
Tssr110254	transcription start site region 110254	1163 bp upstream
Tssr110255	transcription start site region 110255	1097 bp upstream
Tssr110256	transcription start site region 110256	1030 bp upstream
Tssr110257	transcription start site region 110257	934 bp upstream