rs29469573 SNP Detail

Summary

• ID
  rs29469573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74720931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCTGATTT AGGCCACGCC TCCTCGGCCT GGGCTTTGGA
  CGCTTCTCCT TTTGATTACT GGTGCCGGGG CCCAACAACG AGGTGCCCTC TAGAGTGGCA
  Y
  ACTTTTAGTC CCCACCCATA TCAGAAACCG GTGGACAAAG AATTTAGGAG AAGGGAAGTA
  AGCCCTGGTT TTGAATGGGA GGGTAATGTA AAGCAGGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38840774	mCV23964391	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss132436462	ENSMUSSNP552934	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss323749907	CHEV_11_74643607	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29469573					SNP	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74720931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	within coordinates
Gm74357	predicted gene, 74357	within coordinates
Mnt	max binding protein	815 bp upstream
Rr402716	regulatory region 402716	1347 bp downstream
Rr402717	regulatory region 402717	126 bp upstream
Rr450974	regulatory region 450974	1819 bp distal
Rr450975	regulatory region 450975	1325 bp distal
Rr450976	regulatory region 450976	within coordinates
Rr450977	regulatory region 450977	694 bp proximal
Rr450978	regulatory region 450978	871 bp proximal
Rr450979	regulatory region 450979	1112 bp proximal
Tssr102911	transcription start site region 102911	783 bp upstream
Tssr102912	transcription start site region 102912	802 bp upstream
Tssr102913	transcription start site region 102913	830 bp upstream
Tssr102914	transcription start site region 102914	1109 bp upstream
Tssr109144	transcription start site region 109144	203 bp upstream
Tssr109145	transcription start site region 109145	554 bp downstream
Tssr109146	transcription start site region 109146	1689 bp downstream
Tssr109147	transcription start site region 109147	1887 bp downstream