rs29470113 SNP Detail

Summary

• ID
  rs29470113
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94968203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAG CAAAGGGCAG CCTTTGTCTC
  K
  AAGCAGTGAA TGGGACCTCA GCCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss38842971	mCV24742205	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss132653049	ENSMUSSNP5842348	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29470113					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94968203 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	92 bp distal
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	576 bp upstream
Rr454944	regulatory region 454944	1721 bp distal
Rr454945	regulatory region 454945	939 bp distal
Rr454946	regulatory region 454946	1203 bp distal
Rr454947	regulatory region 454947	937 bp distal
Rr454948	regulatory region 454948	674 bp distal
Rr454949	regulatory region 454949	406 bp distal
Rr454950	regulatory region 454950	6 bp distal
Rr454951	regulatory region 454951	259 bp proximal
Rr454952	regulatory region 454952	763 bp proximal
Rr454953	regulatory region 454953	1785 bp proximal
Tssr3652	transcription start site region 3652	761 bp upstream
Tssr104346	transcription start site region 104346	426 bp downstream
Tssr110254	transcription start site region 110254	788 bp upstream
Tssr110255	transcription start site region 110255	722 bp upstream
Tssr110256	transcription start site region 110256	655 bp upstream
Tssr110257	transcription start site region 110257	559 bp upstream