rs29471225 SNP Detail

Summary

• ID
  rs29471225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42312685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTTTTCCT ATTTTACCTT GCTGAGAAAC AGATCCAAAC
  TTAAGCCAGT TTCTGTCCAG CACTTGAGAG GTCTTTCAAG AAGACCCCCT TAGAGTGTGA
  Y
  CAGACTTTGT AACCGCTCTC GTTCTCCTTC ACCGTGATAC ATCTTTGTTC CCAGTCTGAG
  GTTTCTTGAG ATACAAACCT CTTAAGTTTA GTTAACAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38841442	mCV23022191	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss132042378	ENSMUSSNP3049612	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29471225					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42312685 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2744	CpG island 2744	1355 bp distal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	653 bp upstream
Rr445406	regulatory region 445406	498 bp distal
Rr445407	regulatory region 445407	1470 bp proximal
Rr445408	regulatory region 445408	1596 bp proximal
Tssr100976	transcription start site region 100976	1903 bp downstream
Tssr100977	transcription start site region 100977	1415 bp downstream
Tssr100978	transcription start site region 100978	1079 bp downstream
Tssr100979	transcription start site region 100979	1003 bp downstream
Tssr100980	transcription start site region 100980	618 bp downstream
Tssr100981	transcription start site region 100981	574 bp downstream
Tssr100982	transcription start site region 100982	537 bp downstream
Tssr100983	transcription start site region 100983	525 bp downstream