rs29471769 SNP Detail

Summary

• ID
  rs29471769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115079464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG GAGTTAGTTG TCGATGGTTG
  R
  ATGCTGCTCA GTGTAAGTGC TGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38841512	mCV22628624	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss132872468	ENSMUSSNP3666347	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss323861640	CHEV_11_115049952	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29471769					SNP	A	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115079464 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	671 bp distal
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	782 bp upstream
Rr403112	regulatory region 403112	1135 bp downstream
Rr459794	regulatory region 459794	1141 bp distal
Rr459795	regulatory region 459795	805 bp distal
Rr459796	regulatory region 459796	363 bp distal
Rr459797	regulatory region 459797	28 bp distal
Rr459798	regulatory region 459798	81 bp proximal
Rr459799	regulatory region 459799	695 bp proximal
Tmem104	transmembrane protein 104	within coordinates
Tssr3728	transcription start site region 3728	1067 bp downstream
Tssr3729	transcription start site region 3729	17 bp downstream
Tssr3730	transcription start site region 3730	939 bp upstream
Tssr105849	transcription start site region 105849	1076 bp downstream
Tssr111731	transcription start site region 111731	1354 bp upstream
Tssr111732	transcription start site region 111732	1320 bp upstream
Tssr111733	transcription start site region 111733	1279 bp upstream
Tssr111734	transcription start site region 111734	802 bp upstream
Tssr111735	transcription start site region 111735	770 bp upstream
Tssr111736	transcription start site region 111736	126 bp downstream